Showing posts with label cancer diagnostics. Show all posts
Showing posts with label cancer diagnostics. Show all posts

Thursday, December 13, 2012

Useful CTC resources and links




CTC e-learning module with CME credits

"Learning Objectives
To understand the role of circulating tumour cells (CTCs) and disseminating cancer cells (DCCs) in metastatic process
To learn about basic techniques for CTCs isolation, their molecular profile analysis, and predictive and prognostic characteristics
To discuss most important reports regarding implementation of CTCs in biomarker studies and to correlate their molecular profiles with clinical data"
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Link to CTC research at Scripps Institute. Lots of useful info
http://cancer.scripps.edu/default.aspx
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A broad collection of staining, molecular analysis and other protocols relating to CTCs can be found here Circulating Tumor Cell protocols
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useful summary and commentary on CTCs The Arts, Sciences and Medicine: CTCs ( CIRCULATING TUMOR CELLS )
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The Grand Challenge in Circulating Tumor Cell Isolation: The need for a Gold Standard Platform


The urgent need for a Standardized Technology for Tumor Cell Isolation
In recent years, a number of technologies have claimed the ability to isolate tumor cells for clinical cancer management. These technologies can be broadly classified as falling into the following categories with regards to their value proposition,
a)      Using specific antibodies (either single-EpCAM or combination) in a conventional magnetic isolation assay or a microfluidics assay (Eg., Veridex, Biocept, OnQity, Biofluidica, Adnagen)
b)      Using size and biomechanical properties as a differentiator between tumor cells and normal blood cells (Eg., Clearbridge, CellSeivo, Rare cells, Screen Cell, Creative Microtech, Filtini, Parsortix)
c)       Technologies whose value proposition is in automated enumeration and identification such as automated microscopy  (Eg., Bioview, Ikonisys, eDAR, Epic Sciences)
d)      Technologies that use electrical properties (Silicon biosystems, Apocell)
The advantages and disadvantages of various techniques are tabulated extensively in various reviews [1 -8]. It’s also widely noted that most of these technologies remain to be independently validated and not considered optimal for tumor cell isolation [9-15]. Some criterion were recently (2012) suggested by a group of KOLs, titled “Considerations in the development of circulating tumor cell technology for clinical use” [16]. A list of technological requirements of an ideal CTC platform were previously suggested in a Lab on a chip paper in 2011 titled “Circulating Tumor Cells: The Grand Challenge” [17].
The pain due to lack of robust and standardized tumor cell isolation technology:
So far CTCs have only been FDA approved for cancer prognosis, which is of limited clinical utility. The real clinical impact of CTCs will be realized when their relevance is shown for personalized therapy & monitoring and early diagnosis. The clinical community is now investigating this relevance. However, the present technology platforms are inherently biased and may lead to poor clinical interest. For example, “A recent study revealed that “normal-like” breast cancer cells, which usually display an aggressive phenotype, express low expression of EpCAM and are not detected by the CellSearch® test [65]. Moreover, a retrospective study that involved 292 patients with metastatic breast cancer has shown that 36% of them showed an undetectable CTC status, which could be due, at least in part, to an underestimation of CTCs by the Cell-Search® test due to CTC undergoing epithelial-mesenchymal transition (EMT) ” [1]
Another paper noted that, “ The challenge of CTC detection is related to the requirement of both high sensitivity and specificity. A wrong labeling of ‘‘non-tumor cells’’ (epithelial non tumor cells or normal hepatocytes, for instance) as ‘‘tumor cells’ could generate poor clinical interest” [8]
This problem is well summarized by the following passage in recent literature “The true potential of CTCs has yet to be realized because of limits in technology used to capture these cells and our lack of a complete understanding of metastasis. This is complicated by the fact that our understanding of CTCs is subject to the techniques available to identify and isolate CTCs, and the biases inherent to them.” [6]
From the above passage it is very clear that what is urgently needed now in CTC field is not “cheap” or “fast” technology but the “most reliable” platform to accurately reflect the patient physiology. 
The problem with existing technologies:
“Despite the recent technological advances, the development of a single device capable of simultaneously achieving high throughput, high target cancer cell recovery, high purity, and high cell viability remains challenging.” [5]
As pointed out by the numerous review papers, all technology platforms existing today suffer from one trade-off or another. For example, antibody-based technologies are limited by the expression of specific antibodies. A universal CTC marker is yet unknown and given the heterogeneity of cancer [18], it is doubtful that a single universal cancer marker will be found.
The problem with Size and biomechanical properties based isolation  “The size range of different tumor cells is highly variable and does overlap with that of normal blood cells” [19]. Also, “CTC may not be always .8 mm making the sensitivity of these assays questionable.” [20]. Moreover, “ these methods suffer from low cell viability resulting from potential damage incurred as the cells pass through narrow filter pores, which renders the use of microfilters less compatible for live cell interrogations (e.g., cell suspensions were partially fixed before being passed through a membrane micro-filter)” [4]
The assessment of technologies based on size is well summed up in this review “Unfortunately, large leukocytes can be trapped by the filter as well, therefore contaminating the CTC fraction or small CTC can pass through the pores therefore depleting the CTC population. This is why this technique is generally considered not highly sensitive and poorly specific” [8]
There are several companies based on the principle of size and biomechanical properties and this is the most crowded sub-space within CTC. A reason for this is because of low technological barrier to entry and wide availability of hole making technology in various materials such as polycarbonate, silicon nitride and other polymers. As it can be readily inferred by-passability is easy and patentability is low for technologies operating on this principle. 
The Solution:
The clinical need and technology requirements are well documented [16, 17]. Briefly, the assay must be highly sensitive, well characterized with analytical and clinical samples, standardized for cross reference studies at various clinical sites, should be free of operator bias, should use standard blood collection and processing techniques and should be time stable over a period to allow for stable sample transportability. Above all, the assay should isolate viable, pure tumor cells with high efficiency in a simple and cost effective manner. 
Neegative depletion approach has been recommended over the positive selection method [2, 21]. In negative depletion approach, all normal cells are eliminated, leaving behind “abnormal cells”. These cells are then identified by immunohistochemical staining or molecular methods.
Conclusion: Despite the presence of several technologies, the need for a gold standard tumor cell isolation platform remains unmet. 

References:
1.       Am. J Cancer Res 2011;1(6):740-751
2.       Nature reviews, clinical oncology, December, 2010
3.       Clinical Chemistry 58:5 (2012)
4.       Lab Chip, 2012, 12, 1753–1767
5.       Review article, Frontiers in oncology, vol 2, article 69, july 2012
6.       J Cancer Res Clin Oncol DOI 10.1007/s00432-011-0988-y
7.       International Journal of Hepatology, Volume 2012 (2012),
8.       Methods 50 (2010) 289–297
9.       Circulating tumor cells: approaches to isolation, and characterization, JCB review, 2011
10.   New technologies for the detection of circulating tumour cells, British Medical Bulletin 2010; 1–16
11.   Let Me Do More Than Count the Ways: What Circulating Tumor Cells Can Tell Us about the Biology of Cancer  VOL. 6, NO. 5, 1307–1310 MOLECULAR PHARMACEUTICS, 2009
12.   Disseminated Tumor Cells in Bone Marrow and Circulating Tumor Cells in Blood of Breast Cancer Patients: Current State of Detection and Characterization
 Pathobiology 2008;75:140–148
13.   Circulating tumor cells (CTC) detection: Clinical impact and future directions Patrizia Paterlini-Brechot *, Naoual Linda Benali  Cancer Letters 253 (2007) 180–204
14.   Clin Cancer Res; 16(20) October 15, 2010
15.   Cancer Letters 253 (2007) 180–204
16.   Journal of Translational Medicine 2012, 10:138 
17.   Lab Chip, 2011,11, 375-377
18.   PLoS ONE 7(5): e33788
19.   Current Opinion in Genetics & Development 2010, 20:96–99
20.   British Medical Bulletin 2010; 1–16
21.   Cancer Res; 71(18), 2011

Paper Commentary: Microsieve lab-chip device for rapid enumeration and fluorescence in situ hybridization of circulating tumor cells - Lab on a Chip (RSC Publishing)

Microsieve lab-chip device for rapid enumeration and fluorescence in situ hybridization of circulating tumor cells - Lab on a Chip (RSC Publishing)


Summary:
This paper is among several that use the perforated membranes to capture CTCs. The premise is that there is a clear size and deformability difference between tumor and non-tumor cells. This premise is contested.

The main issue with this approach is that its always a tradeoff between capture efficiency and purity. Quoted from manuscript "Physical size separations could potentially undercount a small portion of CTCs
"
The size filtration is combined with a tweaked metamorph image classification algorithm for automated image analysis.  
similar to automated microscopes and algorithms offered by Bioview and Ikonisys.


Advantages:
  • A generic advantage of filtration schemes is "fast" and "cheap". 
Limitations:
    • In comparison with polymer based filters, silicon filters are much more expensive.
    • the key limitation of filtration schemes is their inherent trade-off between recovery and purity
    • A wide variety of cell types and tumor types should be used to demonstrate broader utility of this device
    • cells undergoing EMT also undergo structural and biomechanical adaption to allow passage through blood vessels thus may be missed by physical property based approaches

Considerations in the development of circulating tumor cell technology for clinical use


Journal of Translational Medicine 2012, 10:138 doi:10.1186/1479-5876-10-138

Abstract
This manuscript summarizes current thinking on the value and promise of evolving
circulating tumor cell (CTC) technologies for cancer patient diagnosis, prognosis, and
response to therapy, as well as accelerating oncologic drug development. Moving forward
requires the application of the classic steps in biomarker development―analytical and
clinical validation and clinical qualification for specific contexts of use. To that end, this
review describes methods for interactive comparisons of proprietary new technologies,
clinical trial designs, a clinical validation qualification strategy, and an approach for
effectively carrying out this work through a public-private partnership that includes test
developers, drug developers, clinical trialists, the US Food & Drug Administration (FDA)
and the US National Cancer Institute (NCI).

click here for the full article

A Brief Comparison Of The Various Techniques And Methods For Isolation Of Circulating Tumor Cells (CTC’s)


The link below has a brief but informative comparison of various technologies available for Circulating Tumor cell isolation
www.rgccusa.com/index.php/download_file/view/38/1/

The Problem with using size and deformability as the criteria to isolate Circulating tumor cells (CTC)



  • “The size range of different tumor cells is highly variable and does overlap with that of normal blood cells” [1]
  • However, CTC may not be always .8 mm making the sensitivity of this assay questionable. [2]
  • However, these methods suffer from low cell viability resulting from potential damage incurred as the cells pass through narrow filter pores, which renders the use of microfilters less compatible for live cell interrogations (e.g., cell suspensions were partially fixed before being passed through a membrane micro-filter72) [3]
  • Due to the force (centrifugation or pumping) many of the cells are destroyed (viability decreased upto 70% of CTCs). Many CTCs will pass through the narrow passage due to EMT as they become more flexible and bendable. Many blood cells still remain that produce contamination and noiseHence it is not considered to be the best method[4]
  • isolation of circulating tumor cells (CTCs) by size exclusion can yield poor purity and low recovery rates, due to large variations in size of CTCs, which may overlap with leukocytes and render size-based filtration methods unreliable [5].
  • Physical size separations could potentially undercount a small portion of CTCs  [6]
  • Our observations support the relationship between tumor-initiating capacity and cell deformability, and demonstrate that tumor-initiating cells are less differentiated in terms of cell biomechanics (from normal cells). Thus deformability-based techniques may miss tumor initiating cells. [7]
  • Metastatic cells are more deformable and pass through capillaries faster than non metastatic cells [8]



[1] Current Opinion in Genetics & Development 2010, 20:96–99
[2] British Medical Bulletin 2010; 1–16
[3] Lab Chip, 2012, 12, 1753
[5] Anal Chem. 2012 Sep 4;84(17):7400-7
[6] Lab Chip, 2012,12, 4388-4396
[7] PNAS November 13, 2012 vol. 109no. 46 18707-18712
[8] http://www.pnas.org/content/early/2013/04/19/1218806110

Relationship among circulating tumor cells, CEA and overall survival in patients with metastatic colorectal cancer


doi:10.1093/annonc/mds336

Background: We previously reported results of a prospective trial evaluating the significance of circulating tumor cells
(CTCs) in patients with metastatic colorectal cancer (mCRC). This secondary analysis assessed the relationship of the
CTC number with carcinoembryonic antigen (CEA) and overall survival.
Patients and methods: Patients with mCRC had CTCs measured at baseline and specific time points after the
initiation of new therapy. Patients with a baseline CEA value ≥10 ng/ml and CEA measurements within ±30 days of the
CTC collection were included.
Results: We included 217 patients with mCRC who had a CEA value of ≥10 ng/ml. Increased baseline CEA was
associated with shorter survival (15.8 versus 20.7 months, P = 0.012). Among all patients with a baseline CEA value of
≥25 ng/ml, patients with low baseline CTCs (<3, n = 99) had longer survival than those with high CTCs (≥3, n = 58;
20.8 versus 11.7 months, P = 0.001). CTCs added prognostic information at the 3–5- and 6–12-week time points
regardless of CEA. In a multivariate analysis, CTCs at baseline but not CEA independently predicted survival and both
CTCs and CEA independently predicted survival at 6–12 weeks.
Conclusions: This study demonstrates that both CEA and CTCs contribute prognostic information for patients with
mCRC.

Paper commentary: A simple packed bed device for antibody labelled rare cell capture from whole blood





Abstract:
We have developed a system to isolate rare cells from whole blood using commercially available components and simple microfluidics. We characterized the capture of MCF-7 cells spiked into whole human blood using this system to demonstrate that enrichment and enumeration studies give results similar to in situ surface-modified devices while reducing fabrication and operation complexity.

Comments:

>>EpCAM-based technique

>> very low throughput 
"This suspension of whole blood was pumped from 3 mL syringes (ten-syringe infusion/withdraw pump, Cole-Parmer) at 0.2 mL h−1 for 1 h through the microfluidic packed bed to allow immobilization of the cancer cells. "

at this rate it will take 5 hours to process 1 mL of blood.

>> seems like an improvement over the Harvard CTC-chip, but still does not solve some fundamental issues with EpCAM based capture. The throughput is impractical

multiple channels can be used, but that will dramatically increase the imaging and staining area, making it difficult to perform high resolution cytomorphological analysis

Paper commentary: Microfluidic flow fractionation device for label-free isolation of circulating tumor cells (CTCs) from breast cancer patients

Biosensors and BioelectronicsVolume 40, Issue 1, 15 February 2013, Pages 206–212

Principle of operation: Based on hydrodynamic forces and cell size differences

steps: 7.5 ml of blood subject to RBC lysis followed by centrifugation followed by resuspension followed by processing through chip

cell yield: 0 to 21 cells in 7.5 ml of blood.

purity: NA



Thursday, December 30, 2010

Commercial Circulating Tumor Cell CTC technology platforms



For a comprehensive review on the various CTC technologies and the clinical significance of CTCs, please refer to our review paper downloadable here

Company
Website
Technology
Veridex Cellsearch systemhttp://www.veridex.com/cellsearch/Products.aspxEpCAM coated beads based positive selectio using magnetic beads followed by stainign and image analysis
http://clincancerres.aacrjournals.org/content/10/20/6897.short
http://youtu.be/Sg8-LNR4cIA
Biocept Laboratorieshttp://www.biocept.com/Biocept's microfluidic channel is coated with Streptavidin . CTCs are captured using an antibody cocktail, which includes EpCAM, that is added to cells prior to capture. 
http://bmf.aip.org/resource/1/biomgb/v5/i3/p034119_s1?isAuthorized=no
Onqityhttp://www.on-q-ity.com/EpCAM coated microposts arranged in a geometric pattern to creat a size gradient. end result is a compbination of EpCAM and size enrichment
http://www.on-q-ity.com/science/
*Update: I received information from an ex-employee that they have run out of funding and closing operations as of Jan 2013
official: http://bit.ly/13z6ESz
Screencell http://www.screencell.com/size-based filtration 6.5 um and 5.5 um porous membranes for fixed and unfixed cells respectively
http://ar.iiarjournals.org/content/31/2/427.short
Apocell http://www.apocell.com/ dielectrophoretic flow field fractionation. uses electrical property differentiation between normal blood cells and tumor cells
http://bmf.aip.org/resource/1/biomgb/v6/i2/p024133_s1?ver=pdfcov
Parsortixhttp://www.angleplc.com/ uses size and deformability using a wier-type step filter
http://vimeo.com/40643776
Clearbridge Biomedics http://www.clearbridgebiomedics.com/lateral traps to capture tumor cells based on size and deformability
http://vimeo.com/30298239
http://link.springer.com/article/10.1007%2Fs10544-009-9305-9
Creatv Microtech http://www.creatvmicrotech.com/ctc.htmlprecision manufactured size-filter
http://www.creatvmicrotech.com/Documents/AACR_CTC_poster.pdf
Epic Biosciences http://epicsciences.com/PBMCs are layered on glass slide and imaaged using a high definition scanner
http://iopscience.iop.org/1478-3975/9/1/010301
Adnagen http://www.adnagen.com/hosting_i24/daten/combination of antibodies on magnetic beads to enrich cells followed by nested PCR
http://www.adnagen.com/hosting_i24/daten/HTML_Dateien/e_technology_references.htm
Genetx ariol http://www.genetix.com/en/home/index.htmlautomated imaging
Grenier Bio one -oncoquick http://www.greinerbioone.com/en/row/articles/catalogue/article-groups/283_11/ficoll gradient tube with filter to keep the separated fractions from intermizing.
Miltenyi Biotech http://www.miltenyibiotec.com/en/NN_1038_Automated_Cell_Separation.aspxEpCAM magnetic bead based selection
http://clincancerres.aacrjournals.org/content/early/2011/04/28/1078-0432.CCR-10-0498.full.pdf
FAST http://www.parc.com/event/744/detection-and-characterization-of-circulating-tumor-cells.htmlLaser scanning of all blood cells

Ikonisys http://www.ikonisys.com/?q=node/2automated imaging platform combined with size-based isolation
http://www.youtube.com/watch?v=XSUg9LJ7_IU
EPISPOT http://www.lorentzcenter.nl/lc/web/2011/442/abstracts.pdfhttp://www.ncbi.nlm.nih.gov/pubmed/22527495
Silicon Biosystems http://www.siliconbiousa.com/electronic chip to further purify coarsely enriched CTCs
Celula

Celltrafix(http://celltraffix.com/content/blogcategory/15/34/ http://link.springer.com/article/10.1007%2Fs10549-011-1603-2?LI=true
Cynvenio Biosystemshttp://cynvenio.com/high throughput microfluidic sheath flow isolation technology by ferrofluid with cell staining plus downstream DNA analysis via next generation sequencing and/or quantitative allele-specific PCR (Q-PCR) 
http://www.cynvenio.com/storage/technical-library/AACR2012Poster.pdf
Advanced Cell diagnosticshttp://www.acdbio.com/multi-fluorescent RNA in situ hybridisation (ISH)-based CTC detection system named CTCscopeTM
Fluxion Biosystemshttp://www.fluxionbio.com/products/isoflux-circulating-tumor-cell-system/default.aspx 

EpCAM based positive selection
http://youtu.be/QaqULssda98
Sysmex http://www.sysmex.co.jp/en/news/press/2009/090121.html
Synergex corporation http://www.synergxcorp.com/pacs.htm
Vitatexhttp://www.vitatex.com/default.asp?f=on
Bioview http://www.bioview.co.il/HTMLs/Home.aspxAutomated imagining and FISH. isolaiton is performed using ScreenCell's paltform
Aviva Bioscienceshttp://avivabio.com/products/selectionfilter.phpcombination of size-based RBC depletion and WBC depletion
http://pubs.rsc.org/en/Content/ArticleLanding/2010/LC/b922301k
Denovo scienceshttp://www.denovosciences.com/stealth mode
Biofluidicahttp://www.biofluidica.com/EpCAM coated chip to capture followed by release of cells and electrical counting
http://pubs.acs.org/doi/abs/10.1021/ja8015022
Rarecellshttp://www.rarecells.com/size-based enrichment with track-etched polycarbonate membrane
http://www.rarecells.com/iset-publication.html
Maintrachttp://www.maintrac.com /Cells from EDTA-blood were subjected to erythrocyte lysis, isolated by centrifugation, and incubated with a fluorescence-labeled antibody against. EpCAM. The numbers of vital cells were counted via fluorescence microscopy
http://www.laborpachmann.de/pdf/NuklearmedizinWinkens_nu5241208.pdf
Fluidigmhttp://www.fluidigm.com/single cell analysis platform
http://www.fluidigm.com/publications.html 
Precelleonhttp://www.precelleon.com/magnetic cell enrichment
http://www.precelleon.com/files/yang_liying.pdf
TelomeScanhttp://www.oncolys.com/en/index.htmlTelomeScan system does not use EpCAM enrichment. TelomeScan is viral diagnostic reagent to detect viable CTCs including lung cancer. Currently Oncolys BioPharma Inc. in Tokyo is conducting various feasibility studies to detect viable CTCs from 7.5 mL blood and differenciate EMT-CTC and CSC.
http://www.jci.org/articles/view/38609/files/pdf
Cytotrackwww.cytotrack.comCytoTrack detects CTCs without enrichment (such as EpCAM) and without bias on size (such as filtration). CytoTrack has a capacity to scan 100 million cells in just one minute. CytoTrack is commercial available. Please see video on our website.
http://www.cytotrack.com/video.html
ODOSA
(One-Drop, One-Step Assay for Circulating Tumor Cell Detection)
http://bit.ly/XvFumj


The invention is a cell-specific, intracellularly-activated, one step assay for the detection of circulating tumor cells (CTC) in a single drop of blood. The invention is based on cell-specific aptamers linked to fluorophores and quenchers. Lysosomal degradation leads to release of quenching and switches on a strong fluorescent signal in CTCs.





Most promising CTC technologies (from opinion poll conducted by World CTC-Berlin 2013)


image source: http://worldctc-berlin.com/uploads/ffiles/2013/03/145979.pdf



CellSearch (FDA-approved, sFDA (china)-approved, CE-marked)
Company info: 
Veridex, LLC, a Johnson & Johnson Company was founded in 2004 to market the only FDA–approved CTC test.
http://www.veridex.com/
https://www.cellsearchctc.com/sites/default/files/docs/cellsearch-brochure.pdfDescription:
The CellSearch® system consists of the CellTracks Autoprep to immnomagnetically enrich cells expressing EpCAM from 7.5 ml of blood and fluorescently label enriched cells with DAPI, CD45-APC and CK-PE. After which the cells are re-suspended in the cartridge, which is then placed in the CellTracks Magnest which is subsequently placed on the CellTracks Analyzer II. The Analyzer system acquires images using a 10 X NA 0.45 objective with filters for DAPI, PE and APC. The computer generated images are reviewed to confirm CTCs as nucleated DAPI+ cells, lacking CD45 and expressing CK-PE. 



ON-Q-ITY 
Company info: 
On-Q-ity of Waltham, Massachusetts, is commercializing a microchip developed in the lab of Mehmet Toner at Massachusetts General Hospital and Harvard University. On-Q-ity, which stands for “Oncology + Quality + Clarity: On-Q-ity” is an innovative diagnostic company focused on novel technique for circulating tumor cell (CTC) capture and characterization
http://www.on-q-ity.com/
Description:
On-Q-ity employs technology which uses a geometrically enhanced microfluidic immunocapture approach. The OnQChip™ dual capture microfluidic chips capture CTCs by both size and affinity. Chips are manufactured by hot embossing procedure which produces an open chamber containing ~100,000 posts from a plastic slide. The OnQChip™ derivatized with a antiEpCAM, capture cells and filters the blood. Captured cells on the chip were then fixed, permeabilized, and stained with a pan-cytokeratin PE MAb, an anti-CD45 Alexa647 Ab, and DAPI for fluorescent visualization under 5x magnifications using the OnQScan™ fluorescent microscope system. 

AdnaGen 
Company info: Adnagen was acquired by Alere.

http://www.adnagen.com/

Description:
AdnaGen's proprietary 'combination-of-combinations-principle' allows the reliable and very sensitive detection of CTCs. In their approach cancer cells are first enriched in vitro from cancer patient’s blood samples (EDTA or AdnaCollect) using magnetic bead conjugated antibodies. The labeled cells are extracted by a magnetic particle concentrator (AdnaMag and AdnaMag-S) and are subsequently lysed. The cell lysate is used to get mRNA for further analysis. The isolated mRNA is transcribed into cDNA that can be amplified in a following multiplex-PCR. The multiplex PCR detection step analyses the tumor associated gene expression of a variety of relevant tumor markers to make sure that the selected cells are cancer cells. Tests are offered as reagent sets for the detection of cancer cells in human blood. 

BIOCEPT 
Company info: 
Biocept Inc of San Diego, California, in May received a patent for its microfluidic device to isolate circulating tumor cells from body fluids.
www.biocept.com

Description:
 The company's technology captures rare cells in a microfluidic device, which can be used for a variety of different tests. Their unique technology (CEETM-cell enrichment and extraction) and family of laboratory tests (OncoCEETM) offer high value oncology tests. This cell enrichment technology exploits the placement of posts and flow rates through mathematical modeling to enhance isolation and capture of extremely rare cells within a microfluidic channel. By using the CEETM attachment chemistry, the CTCs are captured, immobilized and heated to temperatures for denaturation and hybridization of direct labeled DNA FISH probes to targeted sequences. The cells can also be retrieved through high shear from within the microchannel and concentrated for Taqman real-time PCR assessment of single gene mutations or deletions.

BioCep
Company info: 
BioCep, an Israeli medical device research company, has developed a Cell Enrichment Process (CEP) system for cell separation from various clinical sources
http://www.biocep.com/

Description:
BioCep utilizes the magnetic, closed circuit, generated "virtual mesh" with immunomagnetic marked cells for target cell separation without any surface contact with the targeted cells. Also it uses continuous, linear separation areas created by use of tubing as both transport and separation vessels. Tests have shown that the CEP renders 96-99% pure cells with recovery of 80-99% and viability of 99% in 5-15 min for 109 cells. BioCep is currently developing applications in non-invasive prenatal testing and stem cell separation, based on its advanced technology. The company will market its CEP system as research use only device and will provide consumable kits to its customers.

Fluxion 
Company info: 
Fluxion, founded in 2005 in South San Francisco area, developed IsoFlux Rare Cells Access System for CTCs detection. 
www. fluxionbio.com

Description:
      Benchtop instrument and microfluidic chip for CTC isolation using flow focusing to achieve high efficiency cell separation. Immunomagnetic beads support user-defined capture criteria using one or more capture antibodies (e.g. not limited to EpCAM). Enriched CTC samples are optimized for downstream molecular workflows (qPCR, NGS, FISH, etc.) by providing low elution volume (<20uL), high CTC capture, and minimal background cells.
                                                           
STEMCELL Technologies Inc
Company info: 
 STEMCELL Technologies Inc is a privately-owned biotechnology company that develops speciality cell culture media and cell separation products primarily. STEMCELL grew out of the Media Preparation Service (originally created in 1981) of the Terry Fox Laboratory for Hematology/Oncology Research at the British Columbia Cancer Agency. In 1993, the Media Preparation Service was spun off as STEMCELL Technologies Inc.
Description:
 STEMCELL Technologies offers a wide range of optimized cell separation products for the isolation of cancer cells with their cell separation platforms (high purity and recovery), RosetteSep®, EasySep®, and RoboSep®. They are based on surface antigen immunochemistry based cell separation. They also have column based immunomagnetic negative selection of human epithelial tumor cells StemSep® which is a semi-automated mesofluidic system for epithelial tumor cell isolation.
                                                                                               
BioFluidica Microtechnologies
Company info: 
 BioFluidica Microtechnologies LLC, formed in 2007 develops and commercializes medical diagnostics, pathogen detection, and personalized medicine.
www.biofluidica.com

Description:
 Their CTC detection technology was developed at Louisiana State University. BioFluidica's CTC detection system consists of a portable instrument that works in conjunction with a disposable test-specific polymer cartridge the size of a standard microscope slide. The cartridge has a nano-engineered, high-aspect ratio capture bed. Monoclonal antibodies or aptamers, specific for antigenic integral membrane proteins (EpCAM and/or others) expressed by the target cells, are immobilized on the surfaces of this capture bed. Once the entire sample has been processed, the fluidic channels are rinsed to assure high purity of the subsequent elution of the target cells.  Then the target cells are released from the capture surface and swept through a highly specific, single-cell conductivity sensor, where they are counted and then collected. This counting method eliminates the need for cell labeling and expensive optical detection. Because these cells are intact and viable, they are then available for molecular and/or other analyses. The instrument housing for BioFluidica's CTC detection system contains all the equipment, sample and bulk chemicals needed to process the sample in the polymer cartridge. Typically, the instrumentation include micropumps, a sample container, bulk reagent containers, electronics for the electrical conductivity sensor, and a data acquisition card that can be connected to a USB port. The instrument housing is approximately 1 cubic foot in size, and lightweight. Their applications are focused on CTC detection and molecular diagnostics.

Cynvenio biosystems 
Company info: 
www.cynvenio.com

Description:
Cynvenio biosystems is developing an automated and integrated system that includes upstream CTCs isolation by using combination of microfluidics sheath flow technology and magnetic separation, and the downstream DNA analysis by using quantitative allele-specific PCR (Q-PCR) method. The sample is collected by using special kit supplied by the company and then delivered to the Cynvenio lab for entire process, including CTC isolation and enumeration, and molecular analysis. In the future, the company is targeting to provide an automated instrument, which offers CTC recovery and three staining processes on-chip, including DAPI, CD45-, Cytokeratin, for imaging analysis along with downstream PCR molecular analysis.
             
Miltenyi Biotech 
Company info: 
http://www.miltenyibiotec.com/

Assay principle:
Miltenyi Biotech has developed a technology called MACS® Technology for cell isolation. MACS® Technology offers various separation strategies, which provide the  basis for the isolation of almost any cell type from any species and various sample materials. In their system desired cells in a single-cell suspension are magnetically labeled with MACS® MicroBeads. The sample is then applied to a MACS column placed in a MACS separator to separate the cellsThe unlabeled cells pass through while the magnetically labeled cells are retained within the column. The flow-through can be collected as the unlabeled cell fraction. After a short washing step, the column is removed from the separator, and the magnetically labeled cells are eluted from the column. In this method separation column plays an important part. MACS Columns contain a matrix composed of ferromagnetic spheres covered with a cell-friendly coating. When placed on a magnetic separator, the spheres amplify the magnetic field by 10,000-fold, thus inducing a high gradient within the column. This is crucial for isolation of cells which are only minimally labeled, leaving enough epitopes free for concurrent antibody staining. The space between the spheres is several times larger than primary and most cultured cells. This allows the cells to freely flow through the column. Magnetically labeled cells are held in suspension within the column and do not actually “bind” the column matrix. This suspension minimizes stress on the cells and allows for efficient sterile washing by avoiding cell aggregation. Their system can also be used to isolate a particular target cell type in an unlabeled, i.e., untouched form by magnetically labeling the non-target cells and depletion. During separation, the unlabeled target cell type is collected in the flow-through fraction.


Synergex corporation
Company info: 
Sysmex Corp of Japan is working with privately held Oncolys BioPharma to develop a technology using a virus that copies itself and emits fluorescent light in tumor cells. Synergx Corporation, a wholly-owned subsidiary of Morphogenesis, Inc., is an emerging cell therapy company which began operations in 1996.

Description:
 They utilize synergy of two cutting-edge technologies, one which detects and isolates circulating tumor cells and the other which takes the tumor cells and transforms them into a potent immunological therapy to create an unprecedented approach to the management of malignant conditions. For cell separation they have developed a unique cell separation system, called Polymer-Antibody Cell Separation (PACS™). The system uses cell-specific antibodies with a special polymer that has no affinity for the stem cells themselves, thus eliminating the non-specific collection of unwanted cells which is a common problem and limitation of existing cell separation devices. The unique nature of the polymer also allows the PACS™ method to separate multiple cell types in one operation. With the hardware/software components of the PACS™ device completed, the prototype cell separation cartridge is expected to go to design freeze and beta testing at multiple sites later this year.

CellSievo 
Company info: 
(http://www.biospectrumasia.com/biospectrum/influencers/1536/cancer-diagnostics-device-kick-starts-cellsievo)

Description:
CellSievo is a Singapore-based start-up set up in 2011 to commercialize a non-invasive cancer diagnostics device for personalized cancer management. SureCELL developed by CellSievo is a micro-fabricated silicon microsieve device, which utilize CTCs in human blood as a biomarker and isolates them from patients' whole blood and report its quantity. Isolated cells can be easily eluted out for further molecular analysis. System is based on size based separation of CTCs where device allows blood cells to freely flow through it, while restraining and capturing the targeted cancer cells on the micro sieve surface. Captured cells are stained with fluorescence dyes, which automatically get identified under a microscope with a companion image processing program.

Aviva biosciences 
Company info: 
http://avivabio.com/products/selectionfilter.php

Description:
Aviva bioscience founded in 1999 is currently developing innovative rare cell enrichment technologies, particularly focused on circulating tumor cells (CTC). Their system includes a micro fabricated and nano-fabricated channel to separate cells. Device utilize features that reduces the hydrodynamic pressure experienced by the cells during separation, isolation and concentration process and therefore reduce the likelihood of cell lyses or other damage to the cells. 

Clearbridge BioMedics 
Company info: 
www.clearbridgebiomedics.com

Description:
Clearbridge BioMedics is a spin-off from National University of Singapore (NUS) that specializes in novel platforms with applications in oncology research and diagnostics. The ClearCellTM System comprises patent-pending CTChips® which are microfluidic biochips able to effectively detect and isolate wholly-intact CTCs from small quantities of patient blood samples. The CTChips® contains thousands of crescent shaped microstructures that can isolate CTCs without antibody or magnetic beads. By fluid dynamics, the cells are trapped on the microstructures and reversal of microfluidic flow allows cell retrieval for further molecular analysis. The ClearCellTM system aims to be the next generation non-invasive “liquid biopsy” approach for cancer screening, diagnosis, staging, personalized medication and treatment monitoring. The isolation efficiency of their system is at least 80 % with breast and colon cancer cells.
                                                      
Screen cell 
Company info: 
www.screencell.com

Description:
ScreenCell was founded in 2006 for creating technologies that allow CTCs to become potential end points in future oncology therapeutic arsenals by filtering out healthy live tumor cells. Such live tumor cells are enabled for molecular biology, cell culture and enumeration & cytomorphology evaluation. ScreenCell® filtration device is a small compact and low-cost non-invasive technology for isolating CTCs from whole blood. They provide a full range access to phenotypical, genotypical and functional characterization of CTCs and Circulating Tumor Microemboli (CTMs). Their isolation technology avoids any bias introduced by antibodies and generating false negatives paving way for direct and simple access to molecular biology

Creatv Microtech 
Company info: 
www.creatvmicrotech.com

Description:
Creatv Microtech is a privately-held company founded in 1996. Their business is based on high-aspect ratio microfabrication and ultra-sensitive bio detection. Highly efficient isolation of CTCs from peripheral blood is rapidly achieved through the novel precision microfilter called CellSieveTM. These microfilters have uniform 8 µm diameter pores in a polymer with approximately 90,000 pores imprinted on a 9 mm diameter area in a standard 13 mm filter format. The filtration efficiency using CellSieveTM  were efficient and reproducible with 98 % ± 2 % for fixed and 85 % ± 2 % for unfixed MCF-7 cells wherein contamination of blood cells on the microfilter is on an average of 1000 cells per sample and zero for red blood cells.

Silicon biosystem 
Company info: 
http://www.siliconbiosystems.com/silicon_website.page

Description:
Silicon Biosystems has developed a chip called DEP Array based on their proprietary lab-on-a-chip technology platform designed to individually identify, manipulate and sort specific cells within a heterogeneous population. The base of DEP Array™ is a microelectronic active silicon substrate embedding control circuitry for addressing each individual dielectrophoretic (DEP) cage. In their approach, the electric field is generated by a silicon chip directly interfaced to a micro-chamber containing living or non-living particles in liquid suspension . The micro-chamber is confined between the chip surface and a conductive transparent lid spaced tens of microns apart. The chip surface implements a two dimensional array of micro-locations, each consisting of a surface electrode, embedded sensors and logic. The electrodes induce suitably closed nDEP cages in the spatial region above selected micro-sites, within which single particles may be trapped and levitated individually. Further, the step by step, DEP potential cages can be moved around the device plane concurrently and independently, thus grabbing and dragging single cells and/or micro-beads to or from any micro-chamber location. The device embeds more than 300,000 20μm x 20μm electrodes, which can be used to create up to 76,800 DEP cages in a tiny volume of about 11 μl. Due to the small size of the electrodes in the chip, DEP cage sizes can be set to accommodate one single cell, thus enabling individual manipulation of a large number of cells. In their system samples including 1 to 100,000 cells in suspension can be managed on a single microelectronic chip, which ensures independent motion control for each cell by means of powerful dedicated software. Cells have been found to maintain viability with completely intact DNA and unmodified proliferation capability. The unprecedented flexibility and selectivity afforded by this device represent a breakthrough in biological research and analysis. This DEP Array technology has been fully developed and is now commercially available. 

ApoCell
Company info: 
www.apocell.com
company news
http://bionews-tx.com/news/2013/05/16/apocell-delivers-first-apostream-prototypes-to-national-cancer-institute/

Description:
   ApoCell was founded in 2004 to commercialize biomarker technologies for the effective monitoring of cancer drugs by measuring biomarker expression patterns in tumor biopsy specimens. ApoCell’s ApoStreamTM technology, deploys the inherent difference of circulating tumor cells and other rare circulating cells from peripheral blood mononuclear cells (PBMCs) in morphology and dielectric properties within a microchannel flow field to isolate CTCs using dielectrophoresis field flow fractionation (DEP-FFF)  


Celltrafix 
Company info: 
http://celltraffix.com/

Description:
CellTraffix has developed platform technologies for the selection and manipulation of a broad range of target cells, including CTC, found in the bloodstream for modification, collection, or elimination. Unlike existing products based on antibodies or other molecular tools their system manipulates target cells by mimicking the mechanisms of cell trafficking employed by the body itself. The core platform technology involves a flow-mediated adhesion system, built on a biocompatible device substrate. Their system utilizes a class of molecules called selectins for adhering and rolling target cells either in vitro (in benchtop research kits or clinical diagnostics) or in vivo (in implantable devices), replicating the cellular trafficking mechanisms of the human body.  Once target cells adhere and begin rolling, they can either be purified or removed, or therapeutically modified using a secondary set of signaling molecules on the device surface. CellTraffix is engaging in commercial discussions with selected parties with an intend to pursue both co-development and/or joint-licensing relationships for therapeutic applications.


Sysmex 
Company info: 
http://www.sysmex.co.jp

Description:
Sysmex Corporation has developed a sensitive technology for detecting living tumor cells freely suspended in blood using a virus that replicates and emits fluorescence in tumor cells. In 2010 they have started full-scale research jointly with the National Cancer Center Hospital (Location: Chuo-ku, Tokyo, Japan) to verify clinical usefulness of a technology. In their research work, they detected CTC in breast cancer patients by using the telomerase-specific replication-selective adenovirus OBP-401 which once transferred replicate in telomerase expressing cells and emit fluorescence. In their 50 metastatic patients study 21 patients (42%) were identified as positive with the OBP-401 assay and 27 patients (54%) with the Cell Search assay.

Epic Biosciences
Company info: 
Epic Sciences of San Diego, California, is a start-up founded in mid-2008 by members of Peter Kuhn's lab at the Scripps Research Institute. The company has licensed technology being developed by the lab, which has some big-name partners, including Microsoft, Pfizer and Novartis.
http://epicsciences.com/default.aspx

Description:
Dr Kuhn and diagnostic pathologist Kelly Bethel has recently unveiled what Dr Kuhn calls a “next-generation technology” for detecting and analyzing CTCs in patients’ blood samples. Their approach involves spreading a layer of all nucleated cells found in a blood sample onto a glass surface, and adding fluorescent antibodies to cytokeratin, an essential component of CTCs. The technology then uses a digital microscope and an image-processing algorithm to scan the slide for clumps of aberrant fluorescence. The process requires high-performance computing to help analyze and manage the data, and high-definition imaging to help cellular pathologists identify and analyze any of those fluorescent clumps that signify circulating tumor cells.
                   
RareCells 
Company info: 
www.rarecells.com
video: http://vimeo.com/63360066

Description:
RareCells Inc. was founded in July 2012 to commercialize the patented isolation technology by Size of Epithelial/Throphoblastic Tumor cells (ISET) to isolate Circulating Rare Cells in blood, ISET provides the high sensitivity platform for the isolation of CTCs from whole blood treated within 4 h of collection. After which the isolated CTCs can be characterized by immunolabelling, FISH, Tunel and molecular RNA and DNA analyses etc. This technology enables the search for gene mutation in CTCs as identified by the cytopathological analysis (ex: K-ras, HER2 etc.) for theranostics.

           
Vitatex Inc 
Company info: 
Vitatex of Stony Brook, New York, an affiliate of Stony Brook University and the Research Foundation of the State University of New York, claims its blood test for circulating tumor cells is 10 times more sensitive than current tests.
http://www.vitatex.comhttp://www.vitatex.com/

Description:
Vitatex Inc is a Biotech Company focusing on research and commercialization of rare cell enrichment and diagnostics product. Their products fall among Vita-Cap™ and Vita-Assay™ categories. Vita-Cap™ are modified blood collection tubes (6ml tube format) that use proprietary cell adhesion matrices (CAM) to capture, and preserve viable rare circulating cells in a single step from blood or tissue fluids. Vitatex claim that Vita-Cap™ enriches rare cells in 1-ml of blood to 1-10% purity of a specific rare cells compared to background blood cells. Vita-Assay™ (16-well slide format) is a cell culture plate that also uses CAM to capture and preserve viable rare circulating cells after removal of red blood cells from blood or bone marrow. Vita-Assay™ is useful when further culturing of the rare cells is required.  Both products enable molecular characterization of the enriched cells using analytic tools. They have 3 application platforms namely Cell Separation Technologies for cancer diagnostics, Cell Separation Technologies for anti-cancer drug discovery and Cell Separation Technologies for discovery research.

Oncoquick 
Company info: 
www.greinerbioone.com
Description:
Oncoquick® is a product developed by Greiner Bio-one for CTCs enrichment purpose. It is a density gradient based separation approach. A porous barrier was placed within the 50 mL tube that contains 15 to 30 mL whole blood sample.  After centrifugation of sample, the layer of CTC and platelets can be separated from the leukocytes and erythrocytes.  The average recovery rate is 72% when the average repeatability is 83% with average detection limit of 1.46 CTCs per 20 mL whole blood sample. 
Apart from the above mentioned technologies, Celula has developed a mvs360 cell sorter chip for separating rare cells.Chip enable >90% purity with recovery from upto 500000 cells in 50 µl solution in 5 to 60 min time. Parsortix CTC separation device from ANGEL’s, targets for CTC recovery in relation to lung, pancreatic and colo-rectal cancers.

Epispot:
Company info: 

Description:
In order to overcome the drawback of distinguishing viable from apoptotic cells by both immunocytochemistry and RT-PCR, a new technique has been emerged offering the most significant discrimination for DTC/CTC analyses. This technique was designated EPISPOT (for epithelial immunospot) and is based on the secretion or active release of specific marker proteins using an adaptation of the enzyme-linked immunospot (ELISPOT) technology. The EPISPOT assay offers the advantages that only viable tumor cells will be detected and that protein secretion can be detected at an individual cell level.


Advanced cell Diagnostics
Company info: 
Advanced Cell Diagnostics, Hayward, California, is adapting its RNAscope technology -- a system that looks for small bits of genetic material -- to search for cancer cells circulating in the blood. The company recently won a three-year, $3 million grant from National Cancer Institute.

Description:
Instead of enriching CTCs in patient’s blood by either CTCs size or surface epithelial markers verification, California-based ACD developed a multi-fluorescent RNA in situ hybridisation (ISH)-based CTC detection system named CTCscopeTM. By employing this technology, they are not only able to perform CTCs counting, but also the molecular profiling and viability checking of the CTCs.  ACD filed more than 8 patents along with technologies in-licensed from Affymetrix.  Both companies are in partnership in order to deliver the CTCScope system by year 2013.  

Natural Nano Inc.:
Company info: 
NaturalNano Inc of Rochester, New York, wants to use its nanotube technology to help capture of circulating tumor cells in the blood. A recent Cornell University study found coating the surface of a capture device with nanotubes helped cancer cells stick better.

Description:



Onco Vista
Company info: 
OncoVista Innovative Therapies Inc of San Antonio, Texas, which owns a majority interest in German-based diagnostic company AdnaGen AG, is developing a test that detects slight changes in different cancer biomarkers found on circulating tumor cells.

Description:


Precelleon
Company info: 
Filtini
Company info: 
Filtini, located in Menlo Park, CA, provided a CTCs size-based isolation platform by using specialized microfilter membrane made by Parylene. The technologies will be applicable to different cancer patients, including prostate cancer, breast cancer, colon cancer and pancreas cancer. 

Description:
Filtini uses microfabricated pores on parylene membranes for cell isolation.

Denovo Sciences
Company info: 


Description:


Cellula

Company info: 

Description:

Ariol:

Company info: 
 http://www.genetix.com/en/home/index.html
Description:




Bioview:
Company info: 
http://www.bioview.co.il/HTMLs/Home.aspx
Description: 
Bioview develops automated microscopy solutions for FISH. The microscope is paired up with a size filter for upstream isolation of tumor cells. Bioview has a partnership with screencell.


Ikonisys:
Company info: 
http://www.ikonisys.com/

Description:
Ikonisys develops automated microscopy solutions for cytometry. The microscope is paired up with a size filter for upstream isolation of tumor cells

Canopus Biosciences:
Company info: